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(*: corresponding author)
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So Nakagawa, Yoshihito Niimura, Kin-ichiro Miura, Takashi Gojobori (2010) Dynamic evolution of translation initiation mechanisms in prokaryotes. Proc. Natl. Acad. Sci. USA (in press)
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Atsushi Matsui, Yasuhiro Go, Yoshihito Niimura* (2010) Degeneration of olfactory receptor gene repertories in primates: No direct link to full trichromatic vision. Mol. Biol. Evol. 27: 1192-1200. |
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Yoshihito Niimura (2009) Evolutionary dynamics of olfactory receptor genes in chordates: Interaction between environments and genomic contents. Human Genomics 4: 107-118. |
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Yoshihito Niimura (2009) On the origin and evolution of vertebrate olfactory receptor genes: Comparative genome analysis among 23 chordate species. Genome Biol. Evol. 1: 34-44.
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– Top 3 often-downloaded article in GBE during 2009
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Masatoshi Nei, Yoshihito Niimura, Masafumi Nozawa (2008) The evolution of animal chemosensory receptor gene repertoires: roles of chance and necessity. Nat. Rev. Genet. 9: 951-963. |
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Yasuhiro Go, Yoshihito Niimura (2008) Similar numbers but different repertoires of olfactory receptor genes in humans and chimpanzees. Mol. Biol. Evol. 25: 1897-1907. |
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Yoshihito Niimura (2008)
Olfactory Receptor Genes: Evolution, in Encyclopedia of Life Sciences, John Wiley & Sons, Inc. |
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Takeshi Hase, Yoshihito Niimura*, Tsuguchika Kaminuma, Hiroshi Tanaka (2008) Non-uniform survival rate of heterodimerization links in the evolution of the yeast protein-protein interaction network. PLoS ONE 27: e1667. |
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So Nakagawa, Yoshihito Niimura, Takashi Gojobori, Hiroshi Tanaka, Kin-ichiro Miura (2008) Diversity of preferred nucleotide sequences around the translation initiation codon in
eukaryote genomes. Nucleic Acids Res. 36: 861-871. |
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Genome Information Integration Project and H-Invitational 2 Consortium. Chisato Yamasaki, Katsuhiko Murakami, Yasuyuki Fujii, Yoshiharu Sato, Erimi Harada, Jun-ichi Takeda, Takayuki Taniya, Ryuichi Sakate, Shingo Kikugawa, Makoto Shimada, ..., Yoshihito Niimura, et al. (2008) The H-Invitational Database (H-InvDB), a comprehensive annotation resource for human genes and transcripts. Nucleic Acids Res. 36: D793-799. |
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Yoshihito Niimura, Masatoshi Nei (2007) Extensive gains and losses of olfactory receptor genes in mammalian evolution. PLoS ONE 2: e708. |
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Yoshihito Niimura, Masatoshi Nei (2007) Major gene families in humans and their evolutionary history, in Henry Stewart Talks, Human Population Genetics (ed. Luigi Luca Cavalli-Sforza and Marcus Feldman)
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Yoshihito Niimura, Masatoshi Nei (2006) Evolutionary dynamics of olfactory and other chemosensory receptor genes in vertebrates. J. Hum. Genet. 51: 505-517. |
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Yoshihito Niimura, Masatoshi Nei (2005) From The Cover: Evolutionary dynamics of olfactory receptor genes in fishes and tetrapods. Proc. Natl. Acad. Sci. USA 102: 6039-6044.
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– This paper was introduced in Editor's Choice in Science!
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International Rice Genome Sequencing Project. Annotation and Analysis: Annotation and Analysis: Hisakazu Iwama, Takashi Gojobori, Takeshi Itoh, Yoshihito Niimura, Yasuyuki Fujii, Takuya Habara, Hiroaki Sakai, Yoshiharu Sato, Greg Wilson, Kiran Kumar, et al. (2005) The map-based sequence of the rice genome. Nature 436: 793-800.
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Yoshihito Niimura, Masatoshi Nei (2005) Comparative evolutionary analysis of olfactory receptor gene clusters between humans and mice. Gene 346: 13-21.
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Yoshihito Niimura, Masatoshi Nei (2005) Evolutionary changes of the number of olfactory receptor genes in the human and mouse lineages. Gene 346: 23-28.
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Yoshihito Niimura, Masatoshi Nei (2003) Evolution of olfactory receptor genes in the human genome.
Proc. Natl. Acad. Sci. USA 100: 12235-12240.
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Yoshihito Niimura, Mahito Terabe, Takashi Gojobori, Kin-ichiro Miura (2003) Comparative analysis of the base biases at the gene terminal portions in seven eukaryote genomes. Nucleic Acids Res. 31: 5195-5201.
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Takuji Sasaki, Takashi Matsumoto, Kimiko Yamamoto, Katsumi Sakata, Tomoya Baba, Yuichi Katayose, Jianzhong Wu, Yoshihito Niimura, Zhukuan Cheng, Yoshiaki Nagamura, et al. (2002) The genome sequence and structure of rice chromosome 1. Nature 420: 312-316.
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Yoshihito Niimura, Takashi Gojobori (2002) In silico chromosome staining: Reconstruction of Giemsa bands from the whole human genome sequence. Proc. Natl. Acad. Sci. USA 99: 797-802.
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Ryota Homma, Tetsuya Kimoto, Yoshihito Niimura, Alexander V. Krivosheev, Takayuki Hara, Yoshihiro Ohta, Suguru Kawato (2000) Real-time fluorescence analysis on molecular mechanisms for regulation of cytochrome P450scc activity upon steroidogenic stimulation in adrenocortical cells. J. Inorg. Biochem. 82: 171-180.
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Yoko Sato, Yoshihito Niimura,
Kei Yura, Mitiko Go (1999) Module-intron correlation and intron sliding in family F/10 xylanase genes. Gene 238:
93-101.
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Ryota Homma, Tsutomu Kouyama, Makoto Yamada, Yoshihito Niimura, Alexander V. Krivosheev, Takayuki Hara, Suguru Kawato (1997) Time resolved study of effect of chlorpromazine on mobility of cytochrome P-450 and phospholipids in the inner membrane of adrenocortical mitochondria. J. Pharm. Biomed. Anal. 15: 1215-1222.
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新村芳人、柴田匡邦、大橋渉、田中博 (2010) 医療に対するインフォマティクスからのアプローチ：医療の効率化へ向けて、日本バイオインフォマティクス学会ニュースレター第20号 pp. 2-4.
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新村芳人 (2009) 嗅覚受容体遺伝子ファミリーの進化ダイナミクス ─ゲノムと環境の相互作用─、実験医学 (12月号) 27: 3093-3102.
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新村芳人、根井正利 (2008) 化学受容体遺伝子ファミリーの進化、実験医学 (3月号) 26: 484-491.
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新村芳人、ロベルト・バレロ、五條堀孝 (2006) 真核生物におけるmRNA翻訳制御のインフォマティクス：開始コドン周辺の塩基パターン解析とマイクロRNAの標的遺伝子予測、『機能性non-coding RNA』（河合剛太・金井昭夫 編）、クバプロ pp. 189-202.
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新村芳人、五條堀孝 (2003) 理論生物学：バイオインフォマティクス、『生物物理学とはなにか』（シリーズ・ニューバイオフィジックスII−10）（曽我部正博・郷信広 編）、共立出版株式会社 pp. 125-140.
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五條堀孝、新村芳人 (2000) 情報生物学の発展に向けて、生物物理 40: 318-319.
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新村芳人 (1998) 第２回東アジア生物物理学会に参加して、生物物理 38: 27-28.
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